Label-free data analysis using MaxQuant
Apr 29, 2020 · MaxQuant can directly take those raw files as input. For peptide identification,n MaxQuant uses a search engine called “Andromeda”. MaxQuant offers highly accurate functionalities …
MaxQuant and MSstats for the analysis of TMT data
Aug 13, 2021 · For more information about MaxQuant and its parameter please have a look at the Label-free data analysis using MaxQuant tutorial. To continue with statistical analysis in …
MaxQuant and MSstats for the analysis of label-free data
Feb 17, 2021 · MaxQuant analysis The run time of MaxQuant depends on the number and size of the input files and on the chosen parameters. The run of the training datasets will take a few hours, but …
Library Generation for DIA Analysis - Galaxy Training Network
Dec 2, 2020 · MaxQuant is one of the most popular proteomics softwares because it is easy to use and a free software that offers functionalities for nearly all kinds of proteomics data analysis challenges …
Hands-on: Clinical Metaproteomics 4: Quantitation / Clinical ...
Dec 3, 2025 · In the Discovery Module, we used MaxQuant to identify peptides for verification. Now, we will again use MaxQuant to further quantify the PepQuery-verified peptides, both microbial and …
Proteomics / Label-free data analysis using MaxQuant / Proteomics ...
Nov 15, 2020 · Training material for proteomics workflows in Galaxy
Hands-on: Clinical Metaproteomics 2: Discovery / Clinical ...
Feb 6, 2024 · In MaxQuant, the Experimental Design file is used to specify the experimental conditions, sample groups, and the relationships between different samples in a proteomics experiment. This file …
Clinical Metaproteomics 5: Data Interpretation
Feb 6, 2024 · Training material for proteomics workflows in GalaxyThe final workflow in the array of clinical metaproteomics tutorials is the data interpretation workflow. Interpreting MaxQuant data …
Proteomics / MaxQuant and MSstats for the analysis of TMT data ...
Aug 13, 2021 · Training material for proteomics workflows in GalaxyTo use these workflows in Galaxy you can either click the links to download the workflows, or you can right-click and copy the link to …
Hands-on: Clinical Metaproteomics 3: Verification / Clinical ...
Feb 6, 2024 · The list of confident peptides will be searched against the concatenated peptide-protein datasets from SearchGUI/PeptideShaker and MaxQuant to generate a list of verified peptides.